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Sentences for "arginines "
Several features of the structure of YlxR, including the conserved and appropriately spaced arginines that could form a characteristic positively charged surface patch (colored red in Figure 2b,2c) and a large bent groove reminiscent of other RNA-binding structures, support the argument that YlxR is an RNA-binding protein.
The structure of YlxR is complexed with three sulfate ions, two of which are bound to the arginines R25 and R45, and the third to a lysine pair K62 and K63.
However, as the key arginines associated with the predicted function are absolutely conserved, this implies that the predicted RNA-binding function is conserved across this family.
After filtering out residues that are inaccessible to the solvent, the following residues were identified in the vicinity of the conserved arginines (the conserved arginines are in parentheses): K10, V12, V13, S14, K20 (r9), G40 (R25), G46 (R25), 48Y (R25, R45) and K30 and E31 (R45).
Building on these observations, we suggest two functional possibilities for these proteins: first, they could act as novel protein-modifying enzymes that oxidize the amino groups of lysines or arginines present on histones or transcription factors, alternatively they could affect chromatin structure by oxidizing basic polyamines present in the chromatin and thereby reducing the charge balance.
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