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Sentences for "bootstrap "
Double bootstrap sourcing, sources of nothing.
Across the country, immigrant groups, faith-based institutions, and bootstrap mayors are reinvigorating cities.
Therefore, instead of determining the orthologs of a query sequence on just one gene tree, inference could be performed over bootstrap resampled gene trees [ 14 15 ] to estimate of the reliability of the assignments.
For a simple example with only four bootstrap resamples, see Figure 6.
Output: A list (as in Figure 7) of proteins orthologous to Q , sorted according to a bootstrap confidence value (based on orthology, super-orthology, or subtree-neighborings).
Optional: A gene tree based on the multiple alignment A and the query Q annotated with orthology bootstrap confidence values for the query Q .
The alignment is bootstrap resampled x times (usually, x = 100).
[The time complexity is O( xLN 2), N being the number of sequences, L being their length, and x being the number of bootstrap resamples.
To do this correctly, the aligned query sequence has to be bootstrap resampled in exactly the same way as was used for precalculating the pairwise distances of the Pfam alignment.
which aligned columns from the Pfam alignment were chosen in a particular bootstrap sample) are saved to a file.
With this file it is possible to bootstrap the new alignment of N+1 sequences (Pfam alignment plus query sequence) in precisely the same manner, so the NxN precalculated distances are valid for the (N+1)x(N+1) distance matrix.
Output: "aln" file containing RIO-ready full alignment "hmm" file containing a RIO-ready profile HMM "nbd" file containing pairwise distances "bsp" file bootstrap positions file "pwd" file containing pairwise distances for bootstrap resampled alignment 1.
For all other families, pairwise distances for 100 bootstrap samples were prepared.
Sequences with no orthologs in the current databases Next, we determined the distribution of the top orthology bootstrap values.
106 more results not shown.
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