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Sentences for "carboxylate "
The same result was obtained when p66 INSwas dimerized with p51 having Asp›Ala mutation at amino acid position 186 (one of the catalytically crucial carboxylate triad) but having an intact ß7-ß8 loop.
All sequenced subclass Ba and Bb metallo-ß-lactamases (except VIM-1) have a lysine residue at position 224 [ 41 ] , and all computational models for substrate binding to the metallo-ß-lactamases assume that the invariant carboxylate on substrates forms an electrostatic interaction with this lysine.
In L1, the residue at position 224 is a serine [ 35 ] , and the substrate-binding model for L1 predicts that this serine residue interacts with the carboxylate on substrate via a water molecule [ 37 ] .
Like PP5, the dephosphorylation of 32P-MBP by Ppt1p was stimulated by arachidonic acid and other unsaturated fatty acids, but lipids lacking either a double bond or a carboxylate group were not effective (Table 1).
Among the two carboxylate polymers (Carbomer 974P and CAP), only soluble CAP (at neutral pH) was able to elicit the formation of gp41 six-helix bundles in both HIV-1 IIIB and BaL and was virucidal against both of these viruses.
Agonist 1 and 2 both have a carboxylate group which superimposes with the carboxylate of all-trans RA, and makes stabilizing hydrogen bonds with Arg 274 and 278, and the backbone nitrogen of Ser 289 (Fig.
Variations at residues alpha4 Thr183 and beta2 Ala135 generate different shapes of the binding pocket (Figure 4- Top), but preserve the electrostatic potential of the system: all non-conserved residues at position 183 are hydrophobic, and hydroxyl of Thr154 and Ser154 are superimposed, pointing away from the ligand, towards the carboxylate of Asp122.
The conserved basic residue interacts with the carboxylate group of the acidic substrate, while the bulky or aromatic residue located carboxy-terminal to the basic one forms the base of the cleft that holds this substrate molecule (Figure 2).
GSH synthetase (GshB) catalyzes the subsequent formation of a peptide bond between the cysteinyl carboxylate of ?
-Glu-Cys and the amino group of glycine.
An example of the first scenario is o -succinylbenzoate synthase, which catalyzes the dehydration of 2-hydroxy-6-succinyl-2,4-cyclohexadiene carboxylate to form o -succinylbenzoate synthase in the biosynthetic pathway for menaquinone synthesis.
The ATP-grasp superfamily [ 41] includes at least 15 families of enzymes that catalyze formation of a bond between a carboxylate group of one substrate and an amino, imino or thiol group of a second substrate.
The core and outer polysaccharide regions of LPS should provide additional binding sites, including the carboxylate moieties of KDO or KO (D-glycero-D-talo-oct-2-ulopyranosylonic acid [ 62 ] .
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