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Sentences for "clade "
, Group 1 includes Clades 1-4 and Group 2 is equivalent to Clade 5).
The FastGroup 8 contain sequences that differ from FastGroup 1 by a one bp gap, which explains the reason that ClustalX placed these sequences in Clade 1.
This master tree groups nematodes and arthropods into a clade of ecdysozoans (molting animals) as proposed by Aguinaldo [ 29 ] , a classification which is still controversial.
In the combined analysis, eukaryotes fall significantly outside of the well-defined clade containing ?
- and ?
-proteobacteria (Fig.
The bacterial side of this tree consists of three major clades: i) proteobacterial clade that, in addition to bona fide Proteobacteria, includes also A.
radiodurans, and Synechocystis sp, ii) Gram-positive clade that additionally includes T.
maritima, and iii) an unexpected clade that unites spirochetes and chlamydia.
In contrast, the spirochete-chlamydia clade might reflect a deep phylogenetic relationship (see discussion below).
For each clade (usually, species) forming the group to be tested, trees with alternative topologies were manually constructed by joining the clade in question to every other major group in the tree.
The new clade that might replace it consists of low-GC Gram-positive bacteria and the potential Actinomycetes-Deinococcales-Cyanobacteria group (Fig.
Notably, some of the unexpected groupings within the bacterial domain reported in this study coincide or overlap with those described here, namely, a spirochete-chlamydial clade and a Deinococcales-Cyanobacteria clade.
The grouping of the latter clade with Actinomycetes, the unification of the Deinococcales-Cyanobacteria-Actinomycetes clade with Gram-positive bacteria and the grouping of the two bacterial hyperthermophiles were not reproduced in the work of Brown and co-workers.
In addition, Sphaeromeria, Filifolium, Ajaniopsis , and Stilnolepis (13 species total) were sister to this clade of eight genera that included Artemisia s.
All three clades have segregate genera embedded within each (indicated in bold), and these clades are supported at 77, 74, and 99% posterior probabilities, respectively, with the third clade also supported by a bootstrap value of 99%.
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